species:   Bodot
pid:       PID1130
parent:    Bd-milR55
paralog:   
locus:     SACU01000001.1:87072-87213
matures:   ['UAUCUCGCCCGGCUUCUUAUUGG', 'AGGAGAAUCCGGGCGCGACCGGC']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000001.1:87072-87213

0 out of bounds
19 alignments
13 proper strand
13 stranded perfect matches

        *************************                                                                                  *************************  
AGCUUCGCGCUAUCUCGCCCGGCUUCUUAUUGGCGGAAGCAACAGCCGGGCAUGGCAGUAUAGAACAUGCACGCUUUGCUUAAUACCAAGCUUAAGGGUCGGUAGCAUGCUCUCGUUAGGAGAAUCCGGGCGCGACCGGCUA
........(((.((.(((((((.(((((..((((((.((((...((((.(((((...........)))))((.(((.((((......))))..))).))))))....)))).)))))).))))).))))))).))..)))..
----------UAUCUCGCCCGGCUUCUUAUUGG------------------------------------------------------------------------------------------------------------- l=23 a=10 c
---------------------------------------------------------------------------------------------------------------------AGGAGAAUCCGGGCGCGACCGGC-- l=23 a=0 c*
----------UAUCUCGCCCGGCUUCUUAUUGG------------------------------------------------------------------------------------------------------------- l=23 a=10 ma
---------------------------------------------------------------------------------------------------------------------AGGAGAAUCCGGGCGCGACCGGC-- l=23 a=0 ma*

-------------------------------------------------------------------------------------------------------------------UUAGGAGAAUCCGGGCGCGA------- l=20 a=1 
----------UAUCUCGCCCGGCUUCUUAUU--------------------------------------------------------------------------------------------------------------- l=21 a=2 
----------UAUCUCGCCCGGCUUCUUAUUGG------------------------------------------------------------------------------------------------------------- l=23 a=10 (c,ma)

mb-01111
ax-1011011
ku-01
ss-111110111110
fn-101
